Dendroscope
Dendroscope is a cross-platform desktop application for visualizing and analyzing rooted phylogenetic trees and networks. It can visualize large trees up to several thousand nodes while still remaining interactive, supports many standard formats like Newick and Nexus, and provide
phylogenetics
evolution
trees
networks
visualization
analysis
Dendroscope: Rooted Phylogenetic Tree Visualization
Cross-platform desktop application for visualizing and analyzing rooted phylogenetic trees and networks, supports multiple formats and advanced visualization features.
What is Dendroscope?
Dendroscope is a cross-platform desktop application for visualizing and analyzing rooted phylogenetic trees and networks. It is designed as a user-friendly workbench for the day-to-day needs of biologists working with phylogenetic trees and networks. Some key features include:
- Interactive visualization of large phylogenetic trees up to several thousand nodes
- Support for all standard phylogenetic tree formats like Newick, Nexus, PhyloXML, and others
- Many options for customizing tree graphics with colors, shapes, and graphics integrated into nodes
- Animations of tree rotations, selection changes, and dynamic pruning and zooming
- Measurement tools to analyze quantitative properties of trees and individual nodes
- Standalone, cross-platform desktop application for Windows, Mac OS, and Linux
- Free and open-source, available as binaries or source code
Dendroscope is a popular choice for biologists who need to routinely work with phylogenetic trees and analyze or present them. It focuses on the interactive visualization and customization of trees to allow deeper and customizable analysis compared to static tree images.
Dendroscope Features
Features
- Visualizes rooted phylogenetic trees
- Supports Newick and Nexus file formats
- Interactive labeling and coloring of nodes
- Animations and transitions
- Supports trees with thousands of nodes
- Cross-platform (Windows, Mac, Linux)
Pricing
- Free
- Open Source
Pros
Free and open source
Intuitive user interface
Fast rendering of large trees
Many customization options
Active development and user community
Cons
Limited support for networks
No built-in tree inference or analysis
Steep learning curve for advanced features
The Best Dendroscope Alternatives
Top Science & Education and Bioinformatics and other similar apps like Dendroscope
Here are some alternatives to Dendroscope:
Suggest an alternative ❐
TreeView
TreeView is an open-source, cross-platform application for visualizing hierarchical data in an interactive tree diagram. Developed in Python using the Tkinter GUI toolkit, TreeView allows users to explore, analyze, and make sense of tree-structured data.Some of the key features of TreeView include:Interactive tree exploration - Users can pan, zoom, expand,...
FigTree
FigTree is a graphical viewer and tree editor program for phylogenetic trees. It is designed to be simple to use, providing basic functions for manipulating tree layout and appearance, such as changing branch widths, node shapes, colors and transparencies. FigTree supports the importing and exporting of trees in standard formats...
TreeView X
TreeView X is a feature-rich software for Windows that allows users to visualize data, processes, organizations, ideas, and more in an easy-to-understand tree structure. With an intuitive drag-and-drop interface, users can quickly create tree diagrams, flow charts, organizational charts, mind maps, and other diagrams.Some key features of TreeView X include:Drag-and-drop...
Archaeopteryx
Archaeopteryx is an open-source, Java-based genome browser and annotation visualization tool developed at the Broad Institute. It allows users to interactively explore genome assemblies and annotations, supporting a range of common genomics file formats including FASTA, GFF3, BED, WIG, and VCF.Some key features of Archaeopteryx include:Dynamic zooming and panning to...
