Best FIMO Alternatives (17)
Looking for a FIMO alternative? We've compiled the best options based on user reviews, features, and pricing to help you find the right fit.
What is FIMO? FIMO is a software tool for motif discovery and searching. It finds overrepresented motifs in biological sequences and helps identify functional, transcription factor binding sites or regulatory elements.
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FIMO Overview
FIMO (Find Individual Motif Occurrences) is a software tool part of the MEME Suite for discovering occurrences of known motifs in biological sequences. It searches DNA or protein sequences to find matches to predefined motifs from databases such as JASPAR or user-submitted motifs.Some key features of FIMO include:Searches sequences for matches to motif databases or user-submitted motif filesSupports motifs in MEME, MAST, or TRANSFAC formatCalculates motif p-values and q-values to assess motif match significanceOutputs motif match locations and scoresCan be …