Biohunter
Biohunter is open-source software for analyzing biological network data and simulating network dynamics. It enables researchers to visualize, manipulate, and model biological networks to gain insights into complex systems biology research questions.
network-analysis
systems-biology
modeling
open-source
Biohunter: Biological Network Analysis & Simulation
Open-source software for analyzing biological network data and simulating network dynamics, aiding complex systems biology research
What is Biohunter?
Biohunter is an open-source software application designed specifically for the analysis and simulation of biological network data. It provides researchers with a user-friendly graphical interface to import, visualize, manipulate, and mathematically model biological networks maps in order to study complex systems biology research questions.
Some key features of Biohunter include:
- Import and integration of network data from various common file formats
- Interactive network graphs with customizable visual properties and layouts
- Built-in analysis tools for computing network topology statistics
- Network motif detection algorithms
- Node degree and centrality distribution plots
- Identification of network modules and clusters
- Network randomization and permutation functions
- Simulation engine to computationally model network behavior over time
- Model parameter sweeping capabilities
- Visual plotting of simulation results
- Support for developing custom network analysis plug-ins
- Scripting interface for automating workflows
By providing this extensive toolkit specialized for biological networks in one open-source platform, Biohunter enables systems biologists and bioinformaticians to gain important insights into the complex dynamics of biological systems mapped as interaction networks.
Biohunter Features
Features
- Network visualization
- Network analysis tools
- Dynamical modeling and simulation
- Plugin architecture for extensibility
Pricing
- Open Source
Pros
Open source and free to use
Support for many standard network file formats
Large library of analysis algorithms
Customizable and extensible via plugins
Cons
Steep learning curve
Limited documentation and support
Mostly intended for developers and computational biologists
Official Links
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