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DNApy

DNApy is an open-source Python library and command line tool for analyzing and visualizing genomic data. It provides functions for tasks like reading FASTA/FASTQ files, aligning sequences, variant calling, calculating identity/distance matrices, manipulating and exporting alignments, plotting features, and more.
DNApy alternatives ➤

What is DNApy?

DNApy is an open-source Python library and command line tool for analyzing and visualizing genomic data. It provides a wide range of functionality for common tasks in bioinformatics and computational biology research.

Some key features of DNApy include:

  • Reading common file formats like FASTA, FASTQ, VCF
  • Sequence alignment using BLAST or other algorithms
  • Variant calling from sequence data
  • Calculating identity matrices and distance metrics
  • Manipulating and exporting sequence alignments
  • Data visualization like plots and heatmaps
  • Accessing popular genomic databases
  • Built-in workflows for tasks like phylogenetics

DNApy aims to provide an easy-to-use interface, both through the Python API and command line interface, for researchers to go from raw sequencing reads to publication-ready figures and statistics. The flexible software architecture makes it straightforward to incorporate DNApy components into existing pipelines.

DNApy is free and open source software released under the GNU GPLv3 license. It runs on Linux, Mac and Windows and can leverage high-performance computing infrastructure for large-scale data. The source code is hosted publicly on GitHub.

Official Links

Official Website
www.dnapy.org

The Best DNApy Alternatives

Top Apps like DNApy

SnapGene Viewer, Chromas, BioEdit, Serial Cloner, Geneious, Benchling, DNADynamo, PDRAW32, ApE - A plasmid Editor, VectorFriends, SimVector are some alternatives to DNApy.
Sugggest an alternative ❐

SnapGene Viewer

SnapGene Viewer is a free, standalone software application developed by GSL Biotech for visualizing and analyzing DNA sequences and genetic maps. It supports an extensive range of molecular biology file formats including GenBank, FASTA, ABI trace files, Vector NTI, DNA Star, ApE, and SnapGene files.Key features of SnapGene Viewer...

Chromas

Chromas is a free, open-source spectral analyzer plugin released in 2017. It is lightweight software designed to work as an audio effect plugin in digital audio workstations like Ableton Live, Logic Pro, FL Studio, Reaper, and more.With Chromas added to an audio track, it displays a colorful graphical representation of...

BioEdit

BioEdit is a versatile biological sequence alignment editor and analysis software for Windows. First released in 1997 by Tom Hall, BioEdit has become one of the most widely used bioinformatics tools for molecular biology research.Key features of BioEdit include:User-friendly graphical interface for editing and analyzing DNA, RNA, and protein...

Serial Cloner

Serial Cloner is a utility software used to generate valid license keys and serial numbers for various software programs and applications. It contains an extensive database of serial numbers and activation codes for hundreds of popular commercial, shareware, and freeware software titles.With Serial Cloner, users can easily generate working...

Geneious

Geneious is a commercial bioinformatics software platform developed by Biomatters for DNA, RNA, and protein sequence analysis and manipulation. It provides an intuitive graphical user interface and integrates multiple commonly used tools for genomics research.Some key features of Geneious include:Sequence alignment with both global and local algorithmsPhylogenetic tree...

Benchling

Benchling is a leading cloud-based software platform used by over 200,000 scientists for managing and sharing biological data. It provides an intuitive interface and powerful tools to help research teams design DNA, clone genes, sequence genomes, and analyze data from anywhere with an internet connection.Key features of Benchling include:Molecular...

DNADynamo

DNADynamo is a powerful DNA sequence design and optimization software tool developed by Blue Heron Biotech. It enables synthetic biologists and biological engineers to design novel DNA components and pathways such as promoters, transcription factors, genes, vectors, and more.Some key features of DNADynamo include:Intuitive drag-and-drop graphical user interface...

PDRAW32

PDRAW32 is a basic computer-aided design (CAD) software application used for 2D drafting and drawing as well as simple 3D modeling. It provides a range of tools and features for creating and editing technical drawings, floor plans, illustrations, schematics, and other graphics.Key features of PDRAW32 include:Intuitive user interface...

ApE - A plasmid Editor

ApE (A Plasmid Editor) is a feature-rich software application for creating, viewing, editing, graphing, and analyzing DNA plasmid sequences. It is designed to be simple to use, yet powerful enough for the daily tasks of a molecular biologist.Some key features and capabilities of ApE include:Intuitive graphical user interface...

VectorFriends

VectorFriends is a powerful vector graphics editor and illustration software application targeted at artists, designers and illustrators. It provides professional-level tools for creating illustrations, diagrams, logos, charts and graphs using vectors.Some key features include:Intuitive user interface for easy drawing and shaping using vectorsSupport for layers and groups to...

SimVector

SimVector is an artificial intelligence-powered semantic search and text analysis platform. It allows users to upload large collections of text documents such as research papers, news articles, product manuals, etc. and creates a semantic index that captures concepts, contextual meaning, and relationships between terms.Using advanced machine learning and neural...