WinContig
WinContig is an open-source bioinformatics software tool used for genome assembly. It can assemble small genomes like bacteria and viruses from next-generation DNA sequencing data.
genome-assembly
dna-sequencing
WinContig: Open-Source Genome Assembly Tool
WinContig is an open-source bioinformatics software tool used for genome assembly. It can assemble small genomes like bacteria and viruses from next-generation DNA sequencing data.
What is WinContig?
WinContig is an open-source bioinformatics software application used for de novo genome assembly. It utilizes overlap graphs and contig assembly algorithms to assemble short DNA sequencing reads from next-generation sequencers like Illumina into longer contiguous sequences called contigs.
Key features of WinContig include:
- Assembly of small genomes up to 10 million base pairs such as bacteria, viruses, mitochondria
- Support for paired-end and mate pair libraries
- Overlap graph and contig assembly visualization
- Memory-efficient to run on a desktop computer
- Command line and graphical user interface
- Multi-threaded for fast performance
- Compatible with Windows, Linux and Mac OS
WinContig generates high-quality assemblies from Illumina sequence data and is well-suited for assembling microbial genomes, targeted gene regions, plasmids and organelles. It has a small memory footprint allowing it to run on a standard desktop computer.
WinContig Features
Features
- Assembles genomes from next-generation sequencing data
- Supports various data formats like FASTQ, FASTA, QSEQ
- Performs read error correction
- Scaffolds contigs using paired-end read data
- Visualizes assembly graphs and metrics
Pricing
- Open Source
Pros
Free and open source
Easy to use graphical interface
Good for small genomes
Actively maintained and updated
Cons
Not suitable for large complex genomes
Limited to Illumina short read data
Fewer features than other assemblers
Official Links
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