BioRead
BioRead is open-source software for visualizing biological data such as sequencing reads. It allows users to load genome annotation files and map sequencing data like RNA-Seq, ChIP-Seq, and VAR-Seq to it in an interactive viewer.
BioRead: Open-Source Biological Data Visualization
Open-source software for visualizing biological data, including genome annotation files and sequencing reads.
What is BioRead?
BioRead is an open-source, interactive genome browser designed for visualization of high-throughput sequencing data. It supports a variety of common genomics file formats including BAM, BIGWIG, BED, GFF/GTF, VCF, and more.
Some key features of BioRead include:
- Fast visualization and scrolling through large genomic datasets
- Integration of diverse data types into a single view, e.g. combining ChIP-Seq peaks with RNA-Seq coverage plots
- Customizable and shareable genome tracks for gene annotations, custom data, and more
- Region-specific zooming to nucleotide-level resolution
- Export publication-ready images
- Support for indexed or non-indexed BAM files from diverse sequencing applications
- Use as a standalone application or integrate into existing analysis pipelines
BioRead aims to provide an intuitive graphical interface to help researchers gain biological insight from sequencing experiments spanning transcriptomics, genomics, epigenomics, and more. Its interactive and customizable tracks enable scientists to integrate, visualize, explore, and disseminate diverse genomics datasets.
BioRead Features
Features
- Interactive genome browser to visualize sequencing data
- Support for common genomics file formats like BAM, BED, GFF, GTF, VCF
- Ability to visualize RNA-Seq, ChIP-Seq, VAR-Seq and other NGS data
- Customizable and shareable genome tracks
- Navigation of reference genome and zooming capability
- Visualization of sequence motifs and genomic variants
- Integration of genome annotation data
Pricing
- Open Source
Pros
Open source and free to use
User-friendly graphical interface
Support for multiple genome assemblies and annotations
Customizable visualization options
Platform independent
Cons
Limited built-in analysis capabilities compared to IGV or UCSC browser
Less support documentation compared to commercial tools
Requires some bioinformatics expertise to utilize fully
Only supports basic NGS data types, lacks support for advanced visualizations
Official Links
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