OptiMole
OptiMole is a 3D molecular viewer and editor for proteins, DNA, ligands, and other molecules. It allows interactive modeling, optimization, and analysis of molecular structures.
3d
molecular-viewer
editor
proteins
dna
ligands
molecules
modeling
optimization
analysis
OptiMole: 3D Molecular Viewer & Editor for Proteins
Interactive modeling, optimization, and analysis of molecular structures for proteins, DNA, ligands, and other molecules.
What is OptiMole?
OptiMole is an advanced yet easy-to-use molecular modeling and simulation software for researchers, educators, and students. It provides an intuitive interface for visualizing, editing, and analyzing biological molecules and chemical compounds in 3D.
Key features of OptiMole include:
- Interactive 3D visualization of proteins, DNA, RNA, ligands, and other molecules
- Built-in tools for structure optimization, energy minimization, and conformational analysis
- Support for a wide range of standard molecular file formats
- Customizable visualization with high-quality rendering
- Shared workspace for collaborative modeling and teaching
- Extensive set of modeling, editing, and analysis tools
- Scripting and automation through Python APIs
- Cross-platform support for Windows, Mac, and Linux
Whether you need to view, simulate, validate, or publish molecular models and simulations for research, education, or documentation purposes, OptiMole has the advanced capabilities required by expert users along with the usability and interfaces for newcomers to molecular modeling.
OptiMole Features
Features
- 3D visualization and rendering
- Molecular modeling and editing
- Protein and DNA structure viewing
- Ligand docking and optimization
- Analysis tools for properties like energy and geometry
- Scripting and automation
Pricing
- Free
- Freemium
- Subscription-Based
Pros
Intuitive graphical interface
Support for common file formats
Customizable and extensible via plugins and scripts
Active development and user community
Free for non-commercial use
Cons
Limited built-in force fields and scoring functions
Steep learning curve for advanced features
Only basic analysis tools included
GPU-acceleration requires paid license
Lacks some features of commercial packages
Official Links
The Best OptiMole Alternatives
Top Science & Education and Molecular Modeling and other similar apps like OptiMole
Here are some alternatives to OptiMole:
Suggest an alternative ❐
TinyPNG
TinyPNG is an online application that can greatly reduce the file size of PNG and JPEG images through compression. It uses smart lossy compression techniques to reduce file sizes of images by up to 80%, all while preserving the visual quality.The service is completely web-based, requiring no software downloads or...
JPEGmini
JPEGmini is a JPEG image optimization software that significantly reduces the file size of images without affecting their visual quality. It works by applying advanced optimization algorithms that eliminate redundant information from the JPEG file while preserving details and colors.The software can shrink JPEG files by up to 80% of...
RIOT - Radical Image Optimization Tool
RIOT (Radical Image Optimization Tool) is a free and open-source image optimizer that can significantly reduce the file size of images to improve page load speeds. It works by losslessly compressing images through various optimization algorithms including converting to more efficient formats like WebP when possible.Some key features of RIOT...
ImageOptim
ImageOptim is a free and open-source image optimization tool for Mac OS X. It can losslessly optimize images by removing extra metadata and making compression more efficient. This allows images to load faster in web browsers without losing any visual quality.ImageOptim works with the most common image formats including JPG,...
Statically
Statically is a user-friendly static site generator that makes it easy to build extremely fast, secure websites. Some key features of Statically include:Intuitive visual editor for drag and drop buildingGlobal CDN for fast load timesOne-click deploymentFully customizable themesSEO optimizations out of the boxBuilt-in forms, search, commentsGitHub/GitLab/Bitbucket integration for continuous deploymentStatically...
Sirv
Sirv is an AI-powered image and video hosting platform designed to improve website performance. It automatically optimizes media for faster load times, saves images in multiple sizes, and delivers assets from a global content delivery network.Key features of Sirv include:Seamless integration with content management systems like WordPress and DrupalOn-the-fly image...
E-mage
E-mage is an open-source ecommerce platform built using PHP and MySQL. It was originally created as a fork of AbleCommerce to provide an open-source alternative to commercial systems like Magento or Shopify.Key features of E-mage include:Product catalog management with support for categories, reviews, images, configurable/downloadable products etc.Order and customer management...
Oxipng
Oxipng is an open source command line utility for optimizing PNG image files. It was created to overcome limitations in the PNG compression utilities available at the time of its release in 2010.Oxipng works by re-compressing PNG files to reduce file size as much as possible without losing image quality...
ShortPixel Image Optimizer
ShortPixel is an AI-powered image optimization plugin and API service that compresses JPEG and PNG images to reduce their file size. It can be used to optimize images on WordPress websites through their plugin, or through their API for other types of websites.ShortPixel uses advanced algorithms and smart preprocessing to...
Thumbor
Thumbor is an open-source photo thumbnail service with an easy-to-use URL API. It was created to help reduce bandwidth and storage costs for websites serving images. Instead of storing multiple resized versions of images on disk, Thumbor generates optimized thumbnails on-demand.Some key features of Thumbor include:On-the-fly resizing - Simply pass...
FILEminimizer Pictures
FILEminimizer Pictures is an advanced image optimization software specialized for photos, graphics and digital images. It can drastically reduce image file sizes of formats like JPEG, PNG and GIF in lossless mode, meaning without losing any image quality.The software works by analyzing image files and applying specialized optimization algorithms to...
Thumbr.io
Thumbr.io is an artificial intelligence-powered thumbnail generator service that automatically creates customized thumbnail images for websites, videos, and social media posts. It utilizes advanced computer vision and deep learning techniques to analyze the content and generate high-quality, eye-catching thumbnails that help drive more clicks and engagement.Some key features of Thumbr.io...
