GEDbpedia
GEDbpedia is an open knowledge graph that connects gene expression data to Wikipedia. It allows researchers to explore and analyze gene expression data in the context of Wikipedia knowledge.
gene-expression
biology
knowledge-graph
wikipedia
Gedbpedia: Open Knowledge Graph Connecting Gene Expression Data & Wikipedia
Explore & Analyze Gene Expression Data within Wikipedia Context - Gedbpedia
What is GEDbpedia?
GEDbpedia is an open knowledge graph that integrates public gene expression data with Wikipedia. It extracts entities from Wikipedia articles and interconnects them with gene expression data from public repositories like GEO and ArrayExpress.
By connecting gene expression data to Wikipedia knowledge, GEDbpedia allows researchers to explore and analyze the data in a more contextual way. For example, one can find what genes are highly expressed in certain cell types, diseases or anatomical parts. Or retrieve all current knowledge on Wikipedia about a gene of interest.
Some key features of GEDbpedia:
- Integrates gene expression data from thousands of experiments with Wikipedia knowledge
- Provides a SPARQL endpoint to query the knowledge graph
- Allows browsing and visualization of connections between genes, cell types, diseases etc.
- Links out to source databases like GEO, Wikidata, PubMed
- The entire dataset is freely available to download
By semantically integrating public gene expression data with Wikipedia, GEDbpedia aims to make the data more discoverable and interpretable for researchers. Its linked open data approach also facilitates federated queries across multiple biological databases.
GEDbpedia Features
Features
- Integrates gene expression data with Wikipedia knowledge
- Allows exploration and analysis of gene expression data
- Provides a search interface to find genes and proteins
- Visualizes gene expression data on Wikipedia pages
- Links genes and proteins to Wikipedia articles
Pricing
- Open Source
Pros
Puts gene expression data into real-world context
Enables discovery through Wikipedia knowledge
Simplifies analysis of gene expression data
Open and free to use
Cons
Limited to gene expression data only
Relies on external Wikipedia knowledge
May have sparse or missing connections
Not updated with latest Wikipedia content
Official Links
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