LilyView

LilyView

LilyView is an open-source software for visualizing and annotating molecular models in biology. It enables researchers to visualize complex biomolecular structures and interactions in 3D, annotate them with information, and analyze them to generate new insights.
LilyView image
biology chemistry 3d-visualization molecular-structures open-source

LilyView: Open-Source Molecular Modeling Software

LilyView is an open-source software for visualizing and annotating molecular models in biology. It enables researchers to visualize complex biomolecular structures and interactions in 3D, annotate them with information, and analyze them to generate new insights.

What is LilyView?

LilyView is an open-source software application for visualizing and annotating molecular models in biology research. It provides researchers with an intuitive interface to import, view, and interact with complex biomolecular structures like proteins, DNA, RNA, and molecular complexes in three dimensions.

Some of the key capabilities offered by LilyView include:

  • Importing and visualizing common molecular data file formats like PDB, MOL2, CIF, etc.
  • High-quality rendering of complex molecular graphics and 3D structures
  • Performing basic measurements on molecular models, like distances, angles, torsion angles, etc.
  • Annotating and adding meta-data to molecular models using shapes, labels, markers and more
  • Analyzing molecular interactions like hydrogen bonds, hydrophobic contacts, pi stacking interactions, etc.
  • Creating high-quality 3D molecular images and movies for publications and presentations
  • An extensible architecture to incorporate new molecular data analytics and visualization modules
  • Availability on Windows, Mac and Linux platforms
  • An intuitive user interface to quickly get started with minimal learning curve

Overall, LilyView aims to significantly improve productivity in biological research involving molecular modeling and analysis of complex biomolecular structures and interactions.

LilyView Features

Features

  1. 3D visualization of biomolecular structures
  2. Support for common file formats like PDB, Mol2, SDF
  3. Interactive manipulation and measurement of molecular models
  4. Annotation tools for adding textual notes
  5. Built-in analysis tools like surface area and volume calculation
  6. Plugin architecture for adding new functionality
  7. Scripting interface for automation

Pricing

  • Open Source

Pros

Free and open source

Cross-platform availability

Actively developed and maintained

Intuitive user interface

Powerful 3D rendering engine

Extensible and customizable via plugins and scripts

Cons

Limited built-in analysis capabilities compared to commercial tools

Steep learning curve for new users

Scripting requires programming knowledge

Small user community and limited support resources


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