3DSOM
3DSOM is a 3D molecule visualization and analysis software. It allows users to view, animate, and analyze macromolecular structures in 3D. Key features include structure visualization, measurement tools, sequence analysis, and custom scripting.
3d
molecule
visualization
analysis
macromolecular
structures
animation
3DSOM: 3D Molecule Visualization and Analysis Software
3DSOM is a 3D molecule visualization and analysis software. It allows users to view, animate, and analyze macromolecular structures in 3D. Key features include structure visualization, measurement tools, sequence analysis, and custom scripting.
What is 3DSOM?
3DSOM is a standalone software application for interactive visualization and analysis of macromolecular structures in three dimensions. It is designed specifically for working with protein structures, DNA/RNA molecules, and other biological complexes.
With 3DSOM, users can import structures from the Protein Data Bank (PDB) or other common structure file formats. The intuitive user interface provides various tools for examining structures in detail, including:
- Smooth, high-quality 3D rendering with options to display atoms, bonds, surfaces, etc.
- Measurement tools for distances, angles, surface areas, volumes, etc.
- Interactive animation and configurable views
- Sequence viewer mapped to structural features
- Superposition and morphing of multiple structures
- Integrated Python scripting for advanced customization and analysis
3DSOM runs natively on Windows, Linux and macOS platforms. The software is frequently updated with new features and is well-suited for research groups, educators, students, and anyone interested in studying biomolecular structures.
3DSOM Features
Features
- 3D visualization of molecular structures
- Measurement tools for bond lengths, angles, etc.
- Sequence analysis and alignment
- Custom scripting and plugin capabilities
- Support for common structure formats like PDB, Mol2, etc.
- Interactive molecular animations
- Clustering and dimensionality reduction tools
Pricing
- Free
- Open Source
Pros
Intuitive 3D interface
Powerful analysis and customization features
Cross-platform compatibility
Free and open source
Cons
Steep learning curve
Limited documentation and support
Some features may require programming skills
Official Links
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