Genome

Genome: Open-Source Genome Browser

An integrated genome browser for visualizing genomic data, including genome assemblies, annotations, variation data, expression data, and epigenetic data in an interactive graphical interface.

What is Genome?

Genome is an open-source, integrated genome browser developed by the University of California, Santa Cruz for visualizing genomic data. It is used by geneticists, molecular biologists, and bioinformaticians to view and analyze genome assemblies and annotations. Key features of Genome include:

• Interactive graphical interface for navigating genome assemblies down to the nucleotide level.
• Support for viewing common genomic file formats such as BAM, BED, GFF/GTF, VCF, and BigWig.
• Visualization of genomic features like genes, transcripts, variations, repeats, GC content, etc.
• Options for aligning RNA-Seq and ChIP-Seq data to reference genomes.
• Customizable tracks and configuration options for data analysis.
• Session saving and sharing capabilities to enable collaboration.
• Scriptability via a CustomTrack feature and API for programmatic access.

Genome is implemented in C++ and runs as a desktop application on Linux, Mac and Windows systems. It can be used standalone for small-scale analysis or integrated into larger bioinformatics pipelines and workflows. The open-source codebase enables community contributions to expand functionality over time.

Genome Features

Official Links