GENViewer
GENViewer is a free, open-source bioinformatics genome browser and annotation visualization tool. It allows users to visualize genomic data sets along with annotations in an interactive graphical interface.
genomics
visualization
annotation
GENViewer: Bioinformatics Genome Browser
Free, open-source bioinformatics genome browser and annotation visualization tool for interactive genomic data exploration
What is GENViewer?
GENViewer is an open-source, cross-platform desktop genome browser application used primarily for visualizing genomic annotations and other genomic data sets. It provides an intuitive graphical user interface for browsing annotated genome sequences and exploring relationships between different types of genomic features.
Some key features of GENViewer include:
- Support for common genomic file formats like GFF3, GTF, BED, BigWig, etc.
- Smooth panning and zooming for navigating large genomic regions
- Visualizing transcript structures, read alignments, genomic variants, and other custom annotation tracks
- Linking out to external databases for additional feature information
- Exporting publication-quality images of genome browser visualizations
- Available on Linux, Mac OS X and Windows
- Free and open-source software released under the GNU General Public License
Overall, GENViewer serves as a useful visualization tool for genomics research. Its intuitive graphical interface and support for multiple data formats make it easy for users to visualize and explore genomic annotations in conjunction with their own custom data sets.
GENViewer Features
Features
- Visualize genomic data and annotations
- Support for common file formats like BAM, BED, GFF, GTF, VCF
- Zoom in to base pair level
- Linkage with genome databases like Ensembl and UCSC
- Customizable graphical interface
- Share sessions and bookmarks with collaborators
- Plugin system for additional functionality
Pricing
- Open Source
Pros
Free and open source
Easy to use graphical interface
Support for multiple file formats
Good performance with large datasets
Collaboration features
Extensible via plugins
Cons
Limited built-in analysis features compared to desktop genome browsers
Requires technical expertise to fully utilize advanced features
Only supports human and mouse genomes by default
Limited documentation and community support
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