Jmol

Jmol is an open-source Java viewer for 3D chemical structures that allows users to visualize, manipulate, and analyze molecular models. It supports a variety of chemical file formats and can be used for education, research, and commercial purposes.

Jmol alternatives ➤

What is Jmol?

Jmol is an open-source molecular viewer and visualization software for 3D chemical structures, with features for chemical education, research, and commercial use. It is written in Java so that it can run on desktops and servers, online or locally. Jmol allows users to visualize, animate, manipulate, measure, and analyze a wide variety of molecular file formats including PDB, Mol2, SDF, Gaussian outputs, XYZ, and more.

Some key capabilities of Jmol include:

Interactive visualization and smooth real-time rotation of molecular models
Support for displaying crystal morphologies, surfaces, vibrations and orbitals
Measuring bond lengths, angles, torsions
Displaying space-filling, sticks, balls and sticks, ribbons, cartoon models
Selecting, hiding and coloring atoms
Annotating models with text labels
Exporting high resolution image files

Jmol scripts can be embedded in web pages to create custom interactive visualizations. It has extensive documentation and tutorials available. Jmol is used worldwide for education, training, and research in fields like chemistry, biochemistry, physics, nanotechnology, and material science.

Official Links

Official Website
jmol.sourceforge.net

The Best Jmol Alternatives

Top Apps like Jmol

PyMOL, Rasmol, Avogadro, Ghemical, VMD - Visual Molecular Dynamics, UCSF Chimera, RasTop, Calistry.org are some alternatives to Jmol.

Sugggest an alternative ❐

PyMOL

PyMOL is a popular open-source molecular visualization system created by Warren DeLano and currently maintained by Schrödinger. It is designed specifically for visualizing and animating 3D structures of small molecules and biological macromolecules such as proteins and nucleic acids.Some key features and capabilities of PyMOL include:High-quality rendering...

Rasmol

RasMol is a popular free and open-source molecular visualization software used to visualize and analyze 3D molecular structures such as proteins, DNA, RNA, and small molecules. Originally developed in the early 1990s for computational molecular graphics teaching and research, RasMol has evolved into one of the most widely used tools...

Avogadro

Avogadro is a free, open source molecule editor and visualizer designed for use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers an intuitive user interface for building molecular structures, visualizing 3D representations, and performing simple calculations and analysis.Some key features of Avogadro include:-...

Ghemical

Ghemical is a free, open-source computational chemistry software used to visually edit, display, and analyze molecular systems. Some of its key features include:2D and 3D molecular editor for creating and editing molecular structuresSupport for various file formats like PDB, Mol2, XYZ, and moreVisualization of molecular orbitals and electron densitiesImplementation...

VMD - Visual Molecular Dynamics

VMD (Visual Molecular Dynamics) is a molecular visualization program designed for the display, animation, and analysis of large biomolecular systems using 3-D graphics and built-in scripting. VMD can read standard protein databank files and display the contained structure's secondary structure cartoon, displaying molecules as lines, ribbons, cylinders, spheres, and other...

UCSF Chimera

UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. High-quality images and animations can be generated.Chimera includes complete documentation and several tutorials. Core attributes include:highly integrated...

RasTop

RasTop is an open source, free system monitoring tool for Linux operating systems. It provides a graphical interface to monitor various metrics and resources in real time, including:CPU usage and loadMemory and swap usageDisk I/O and file system usageNetwork bandwidth and packet statisticsSome key features of RasTop include...

Calistry.org

Calistry.org is a comprehensive free online calculator and unit conversion tool. It features hundreds of built-in calculators and unit converters spanning various categories including math, finance, health, fitness, science, engineering, and more.Users can easily convert between units for length, volume, temperature, time, speed, area, pressure, energy, power, data...