Best multiPE Alternatives (19)
Looking for a multiPE alternative? We've compiled the best options based on user reviews, features, and pricing to help you find the right fit.
What is multiPE? multiPE is open-source software for demultiplexing barcoded sequencing data. It efficiently processes fastq files, detects sample indexes with customizable settings, splits reads by sample, and generates per-sample fastq files.
Top Alternatives to multiPE
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multiPE Overview
multiPE is an open-source, command line software tool for demultiplexing barcoded sequencing data from Illumina or other next-generation sequencing platforms. It is designed to efficiently process fastq files containing reads with inline sample barcodes.The key features of multiPE include:Fast processing of large fastq datasetsDetection of sample indexes/barcodes with customizable settings for barcode sequence lists, allowed mismatches etc.Splitting of reads by determined sample index, generating per-sample fastq filesSupport for both single-end and paired-end readsFiltering of low quality and undetermined readsDetailed logging …
Pricing: Open Source
Quick Comparison
| Software | Pricing | Score |
|---|---|---|
| multiPE | Open Source | — |
| LiveSystem pro | N/A | — |
| LiveXP | N/A | — |
| PC Win Boot | N/A | — |
| BartPE | N/A | — |
| Win8PE SE | Open Source | — |
| AppleJack | Free | — |
| Win7PE SE | Open Source | — |
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