ScaffoldHub
ScaffoldHub is a software that allows researchers to easily build customizable workflows for analyzing DNA sequences. It features an intuitive graphical interface for connecting various bioinformatics tools into pipelines.
dna-sequencing
workflows
pipelines
bioinformatics-tools
ScaffoldHub: Build Customizable Workflow for DNA Sequence Analysis
A software solution for researchers to design and visualize workflows, connect bioinformatics tools, and streamline DNA sequence analysis.
What is ScaffoldHub?
ScaffoldHub is a versatile workflow management platform designed specifically for the needs of bioinformatics researchers. It provides an easy way to connect various bioinformatics tools into automated analysis pipelines without the need for complex scripting.
With its graphical workflow editor interface, users can quickly build workflows by dragging and dropping analysis steps and connecting them together. A wide variety of commonly used bioinformatics tools across domains like NGS, proteomics, and systems biology are already integrated and ready to use.
Key features of ScaffoldHub include:
- Intuitive graphical interface for building workflows visually
- No coding/scripting required
- 100+ integrated bioinformatics apps covering a wide range of domains
- Support for running workflows locally or on HPC infrastructure
- Tracking of data provenance across workflow runs
- Collaboration features for sharing workflows
By handling the complexities of tool integration and pipeline plumbing automatically behind its easy drag-and-drop interface, ScaffoldHub allows researchers to focus on their scientific questions and spend less time on informatics.
ScaffoldHub Features
Features
- Graphical interface for building bioinformatics workflows
- Connects various tools like sequence aligners, variant callers, etc into pipelines
- Built-in tools for common tasks like quality control and mapping
- Customizable workflows and ability to save for reuse
- Supports running workflows locally or on cloud platforms
- Integrates with Galaxy for additional tools and workflows
- Collaborative features for sharing workflows
Pricing
- Free
Pros
Intuitive and easy to use
Saves time compared to scripting workflows manually
Reproducible analysis with saved workflows
Scalable computations on cloud platforms
Access to wide range of bioinformatics tools
Active development and support community
Cons
Limited built-in tools compared to Galaxy
Steep learning curve for advanced workflow design
No native support for emerging long-read sequencing data
Currently only supports command-line bioinformatics tools
Official Links
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