PathVisio
PathVisio is an open-source biological pathway analysis and drawing software. It allows users to visualize, edit, analyze, and publish biological pathways and networks with intuitive drawing tools, statistics, and data integration.
pathway-analysis
data-visualization
systems-biology
PathVisio: Biological Pathway Analysis Software
An open-source software for visualizing, editing, analyzing, and publishing biological pathways and networks with intuitive drawing tools, statistics, and data integration.
What is PathVisio?
PathVisio is an open-source software tool for drawing, editing, analyzing, and publishing biological pathways. It is developed by the PathVisio development team at the University of Maastricht in the Netherlands.
Key features of PathVisio include:
- Intuitive drawing tools to create pathway diagrams
- Support for importing pathways from databases like WikiPathways and KEGG
- Data visualization by mapping experimental data onto pathways
- Built-in statistics to identify relevant pathways and interactions
- Ability to edit and extend existing pathways with new interactions
- Integration with Cytoscape for advanced network analysis
- Export pathways to standard formats like GPML, PNG and SVG
- Plugin architecture to extend functionality
- Free and open-source under Apache 2.0 license
PathVisio allows researchers to better understand biological pathways, identify meaningful patterns in omics datasets, and generate high-quality pathway diagrams for publications. Its intuitive user interface, open architecture and active development community make PathVisio a useful toolkit for systems biologists, bioinformaticians and life science researchers.
PathVisio Features
Features
- Drawing and editing biological pathways
- Support for standard pathway and network formats like SBGN, SBML, PSI-MI
- Data visualization and analysis
- Plugin architecture to extend functionality
- Integration with databases like Wikipathways, KEGG, Reactome
Pricing
- Open Source
Pros
Free and open source
Intuitive and easy to use interface
Support for community curated pathways
Extensive import/export options
Customizable and extensible via plugins
Cons
Limited built-in statistical analysis
Steep learning curve for advanced features
Not as full-featured as some commercial alternatives
Official Links
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