Best Cytoscape Alternatives (24)

Looking for a Cytoscape alternative? We've compiled the best options based on user reviews, features, and pricing to help you find the right fit.

What is Cytoscape? Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. It provides a lot of features for network analysis and visualization.

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Top Alternatives to Cytoscape

Gephi

Open Source

Gephi is an open-source network analysis and visualization software package. It allows users to interactively visualize and explore network graphs, …

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Neoclipse

Open Source

Neoclipse is an open-source integrated development environment (IDE) for Eclipse specifically designed for Neo4j graph database application development. It provides …

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Polinode

Open Source

Polinode is an open-source platform for building, training and deploying machine learning models. It provides a visual interface and integrates …

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GraphXR

GraphXR is a data visualization and analytics software that allows users to create interactive graphs, charts, and dashboards to gain …

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NodeXL

Open Source

NodeXL is an open-source template for Microsoft Excel that makes network analysis and visualization easy. It allows users to explore …

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Tabnetviz

Open Source

Tabnetviz is an open-source library for interpreting trained TabNet models. It generates interactive reports to explain predictions and feature importance …

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Wandora.org

Open Source

Wandora is an open source software for qualitative data analysis, research information organization, visualization and publishing. It is suitable for …

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KeyLines Graph Visualization Toolkit

Open Source

KeyLines is an open-source JavaScript library for network and graph visualization. It allows developers to easily create interactive node-link diagrams …

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VOSviewer

Free

VOSviewer is a free software tool for constructing and visualizing bibliometric networks. It can be used to create maps based …

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Kenelyze

Kenelyze is a customer data platform (CDP) that helps companies collect, unify, and activate customer data to improve marketing and …

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Socilyzer

Socilyzer is a social media management platform that allows users to schedule and publish content to multiple social media accounts, …

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Linkurious

Linkurious is a graph visualization and analysis software designed specifically for investigating connections in networks. It allows users to uncover …

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Cytoscape Overview

Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. It allows researchers to visualize molecular interaction networks and biological pathways, gene regulation networks, and social networks. Some key features of Cytoscape include:Interactive visualizations with support for layouts, zooming, labeling, coloringAnalysis tools for network clustering, enrichment, filteringIntegration of node/edge/network data and attributesCustomizable appearance with themes and visual stylesExtensible via apps and pluginsScripting and automation optionsExport network images, data tables, and …

Pricing: Open Source

Quick Comparison

Software	Pricing	Score
Cytoscape	Open Source	—
Gephi	Open Source	—
Neoclipse	Open Source	—
Polinode	Open Source	—
GraphXR	N/A	—
NodeXL	Open Source	—
Tabnetviz	Open Source	—
Wandora.org	Open Source	—
KeyLines Graph Visualization Toolkit	Open Source	—
VOSviewer	Free	—
Kenelyze	N/A	—

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