BatchGEO
BatchGEO is an open-source web application for analyzing and visualizing gene expression omnibus (GEO) data. It allows users to easily query, compare, visualize and analyze GEO datasets without writing any code.
gene-expression
geo-data
data-visualization
open-source
BatchGEO: Open-Source Web App for Analyzing GEO Data
Analyze and visualize gene expression omnibus (GEO) data with BatchGEO, an open-source web application that allows users to query, compare, visualize, and analyze datasets without writing any code.
What is BatchGEO?
BatchGEO is an open-source web application designed specifically for analyzing and visualizing Gene Expression Omnibus (GEO) data. It provides an intuitive graphical user interface that allows researchers to easily query, compare, visualize and analyze GEO datasets without writing any code.
Some key features of BatchGEO include:
- Intuitive search and filtering options to quickly find relevant GEO datasets
- Batch processing and analysis tools to compare multiple datasets
- Interactive visualizations such as heatmaps, box plots and bar charts
- Support for gene set enrichment analysis
- Options to export publication-ready figures
- Integration with popular genomic analysis platforms like Enrichr and STRING
Unlike traditional GEO data analysis which requires bioinformatics expertise, BatchGEO puts customizable GEO data visualization and analysis in the hands of bench biologists. Its simple yet powerful functionalities make it easy for researchers of all backgrounds to unlock insights from public transcriptomic data.
BatchGEO Features
Features
- Batch analysis of gene expression data from GEO
- Visualization of gene expression data
- Differential expression analysis
- Clustering and heatmap generation
- Pathway analysis
- User-friendly web interface
- No coding required
Pricing
- Open Source
Pros
Open-source and free to use
Simplifies analysis of GEO datasets
Provides a range of analysis and visualization tools
Accessible to users without programming experience
Cons
Limited to GEO datasets only
May not have all the advanced features of specialized bioinformatics software
Reliance on web interface may be slower for large datasets
Official Links
The Best BatchGEO Alternatives
Top Ai Tools & Services and Data Analysis and other similar apps like BatchGEO
Here are some alternatives to BatchGEO:
Suggest an alternative ❐
Microsoft MapPoint
Microsoft MapPoint is a discontinued mapping and geographic information system (GIS) software application. It was developed by Microsoft to help users visualize data on maps, create custom maps, perform geographic analysis, and integrate location intelligence into various business processes and workflows.MapPoint allowed users to import, analyze and map data such...
Mapme
Mapme is an intuitive and collaborative online mind mapping and brainstorming application. It enables individuals and teams to visually organize ideas, projects, and workflows all in one place.Key features of Mapme include:Real-time collaboration - Work together on mindmaps at the same time for seamless brainstorming sessionsDiagramming and visualization - Easily...
Sharemap
Sharemap is an open-source web-based mind mapping and brainstorming application. It allows users to create colorful and visually engaging mind maps to organize ideas, concepts, and information. Some of the key features of Sharemap include:Real-time collaboration - Multiple users can work on the same mind map simultaneouslyRich formatting options -...
ESpatial
eSpatial is an open-source desktop geographic information system (GIS) software application used for working with maps and geographic information. It allows users to view, edit, create, and analyze spatial data, and produce maps and other visualizations.Some key features of eSpatial include:Interactive map display with support for pan, zoom, identify, measure,...
Portatour
Portatour is software used to create interactive 360 degree virtual tours. It is designed specifically for photographers who want to showcase their panoramic photos or videos in an immersive way. The key features of Portatour include:Supports panoramic photos taken with any camera and stitched togetherAllows embedding 360 videos for a...
Maptive
Maptive is an intuitive and versatile mind mapping and brainstorming software used by individuals and teams to visually organize ideas and information. Its key features and benefits include:Intuitive and easy-to-use interface allows users to quickly create mind maps from scratch or based on customizable templatesAbility to add text, images, attachments,...
Badger Maps
Badger Maps is a cloud-based field service management software designed for small to mid-sized field service businesses. It provides an end-to-end solution to run field operations efficiently with features for scheduling jobs, dispatching technicians, managing customer information, processing payments, tracking work orders, and route optimization.Key features of Badger Maps include:Mobile...
Mapline
Mapline is an open-source, self-hosted web application that allows users to create custom maps for free. It is an alternative to proprietary services like Google My Maps.Some key features of Mapline include:Ability to add markers, lines, shapes, and text notes to your mapsSupport for multiple layers on a single mapOptions...
ZeeMaps
ZeeMaps is an easy-to-use online map creation and sharing application. It allows anyone to create great looking custom maps for free without GIS expertise or design skills.With ZeeMaps, you can add markers, lines, shapes, text notes, images, and videos to your maps to effectively visualize locations, routes, areas and associated...
EasyMapMaker
EasyMapMaker is a desktop application used to design interactive maps for web and mobile devices. With an intuitive drag-and-drop interface, EasyMapMaker makes it easy for anyone to create custom maps embedded with rich data.Key features include:Import vector data such as points, lines, polygons, imagery, and terrain from files, databases or...
MapAList
MapAList is a versatile mind mapping and list creation software for visualizing ideas and information. With an intuitive drag-and-drop interface, MapAList makes it easy to organize concepts into mind maps, concept maps, outlines, flowcharts, org charts, and standard lists.Key features of MapAList include:Diverse diagram types - Create tree, flowchart, org...
Microsoft Streets and Trips
Microsoft Streets and Trips is a discontinued mapping and travel planning desktop software that was available for Windows operating systems. It was first released in 1985 under the name Frandmeier TND Streets and Trips. Microsoft acquired it in 1994 and published it under their brand name.Streets and Trips offered features...
MapBusinessOnline.com
MapBusinessOnline.com is an all-in-one local SEO software designed to help businesses manage their online presence across various directories, maps, and review sites.It allows businesses to:Claim and optimize listings on 50+ sites like Google My Business, Apple Maps, Bing, Facebook, Yelp, YellowPages, Mapquest and more.Update business name, address, phone, website and...
Map my customers
Map my customers is a cloud-based customer relationship management (CRM) software designed for small to medium-sized businesses. It allows users to visually map their customers based on location data from integrated sources like sales records, mailing lists, social media, and more.Key features of Map my customers include:Interactive maps to visualize...
Pinmaps.net
Pinmaps.net is a powerful yet user-friendly web-based mapping application. It allows users to create custom maps with pins, markers, lines, shapes, and rich data popups. Some key features include:Intuitive drag-and-drop interface to add pins, shapes, etc.Custom markers with images and iconsInfo windows and popups to display data and media for...
Map Your List
Map Your List is an online mind mapping and brainstorming tool used to visually organize ideas, notes, tasks, and more. With an intuitive drag-and-drop interface, users can quickly create mind maps to structure their thoughts and plans.Key features of Map Your List include:Ability to add ideas, notes, images, links, tasks,...
GeoCommons
GeoCommons is an user-friendly, open source mapping and spatial data platform. It provides a web-based interface that allows non-technical users to easily create interactive maps and perform basic spatial analysis without needing to know how to code.Some key features of GeoCommons include:Intuitive drag and drop interface to make custom web...
